CUD Deficiency Primary Carnitine Deficiency Does L carnitine cause fishy body odor? Surprising Truth and Solutions Tonum iSatori Liquid L Carnitine LS3 3000 Exploring the Efficacy of Carnitine as a Dietary Supplement Did You Know? Some people report a fishy smell after supplementing with L carnitine. This happens because certain gut bacteria convert carnitine to trimethylamine, a malodorous compound found in rotting fish. Did You Know? Some people report a fishy smell after supplementing with L carnitine. This happens because certain gut bacteria convert carnitine to trimethylamine, a malodorous compound found in rotting fish.